The purpose of this paper is to establish the influence of shading on a Building Integrated Photovoltaic (BIPV) system´s performance in an urban context. The PV systems of the Science Center of Complexity (Centro de Ciencias de la Complejidad) Building based in the Main Campus of the National and Autonomous University of Mexico (UNAM) in Mexico City was taken as case study. The PV systems are placed on the rooftop and on the south façade of the building. The south-façade PV system, operating as sunshades, consists of two strings: one at the ground floor and the other one at the first floor. According to the building’s facility manager, the south-façade PV system generates 42% less electricity per kilowatt peak (kWp) installed than the one on the roof. The methods applied in this study were Solar Radiation Analysis (SRA) simulations performed with the Insight 360 Plug-in from Revit 2018® and an on-site measurement using specialized tools. The results of the SRA simulations showed that the shading casted by the PV system placed on the first floor on top of the PV system of the ground floor decreases its solar incident radiation over 50%. The simulation outcome was compared and validated to the measured data obtained from the on-site measurement. In conclusion, the loss factor achieved from the shading of the PVs is due to the surroundings and the PV system´s own design. The south-façade BIPV system’s deficient design generates critical losses on its performance and decreases its profitability.